PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G063000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 302aa    MW: 32429.8 Da    PI: 8.1257
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G063000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.5e-162165147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r rW+++E+e+++da  ++G + Wk+I +++  ++t  q++s+ qky
  Brast08G063000.1.p 21 RERWSPDEHERFLDAMLRFGRD-WKKIEEHVR-TKTTVQIRSHAQKY 65
                        78******************77.*********.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-171571IPR009057Homeodomain-like
PROSITE profilePS5129417.4061670IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-91972IPR009057Homeodomain-like
SMARTSM007177.6E-102068IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.5E-162068IPR006447Myb domain, plants
PfamPF002494.5E-132165IPR001005SANT/Myb domain
CDDcd001673.57E-82366No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEETPGTGKK ARKPYTITRP RERWSPDEHE RFLDAMLRFG RDWKKIEEHV RTKTTVQIRS  60
HAQKYFLKVQ KLGLAAGLPP QHPIRKLGMA QLQSTQGPAA GSGAVPGPMM VLHGQPQECP  120
PGVLLQSSIG WSCPGLLPAS NDIQSLGWEG SSGPSSAWVS HGGNQPEPTA AGAHPGGSPS  180
SSSSMGAPSF GNTSMDWAGT GSATQASAIA GAEDDTIPLP LSPDDMHFAQ VYRFVGDVFD  240
PATPCQIEAH LQRLKDMDAI TVKTILLVLR NLEANLTAPQ FEPIRRLLSR YDPGRALFGQ  300
L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227459.11e-174PREDICTED: protein REVEILLE 5-like
TrEMBLA0A0Q3H4R91e-174A0A0Q3H4R9_BRADI; Uncharacterized protein
STRINGORGLA01G0032300.11e-130(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.21e-46MYB_related family protein